Stefan Bekiranov: search on Z-Library

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1

Systems Analysis of Adaptive Responses to MAP Kinase Pathway Blockade in BRAF Mutant Melanoma

Capaldo, Brian J., Roller, Devin, Axelrod, Mark J., Koeppel, Alex F., Petricoin, Emanuel F., Slingluff, Craig L., Weber, Michael J., Mackey, Aaron J., Gioeli, Daniel, Bekiranov, Stefan, Smalley, Keira

Journal:

Year:

2015

Language:

english

File:

PDF, 5.54 MB

english, 2015

2

A Sir2-regulated locus control region in the recombination enhancer of Saccharomyces cerevisiae specifies chromosome III structure

Li, Mingguang, Fine, Ryan D., Dinda, Manikarna, Bekiranov, Stefan, Smith, Jeffrey S., Bystricky, Kerstin

Journal:

Year:

2019

Language:

english

File:

PDF, 6.62 MB

english, 2019

3

Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse

Bradley E. Bernstein, Michael Kamal, Kerstin Lindblad-Toh, Stefan Bekiranov, Dione K. Bailey, Dana J. Huebert, Scott McMahon, Elinor K. Karlsson, Edward J. Kulbokas III, Thomas R. Gingeras, Stuart L.

Journal:

Year:

2005

Language:

english

File:

PDF, 790 KB

english, 2005

4

Epigenetic methodologies for behavioral scientists

Danielle S. Stolzenberg, Patrick A. Grant, Stefan Bekiranov

Journal:

Hormones and Behavior

Year:

2011

Language:

english

File:

PDF, 724 KB

english, 2011

5

Genome-wide analysis of functional sirtuin chromatin targets in yeast

Mingguang Li, Veena Valsakumar, Kunal Poorey, Stefan Bekiranov…

Journal:

Year:

2013

Language:

english

File:

PDF, 1.31 MB

english, 2013

6

Temporal and Spatial Epigenome Editing Allows Precise Gene Regulation in Mammalian Cells

Kuscu, Cem, Mammeadov, Rashad, Czikora, Agnes, Unlu, Hayrunnisa, Tufan, Turan, Fisher, Natasha, Arslan, Sevki, Bekiranov, Stefan, Kanemaki, Masato, Adli, Mazhar

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.16 MB

english, 2018

7

Microarray-Based Analysis of Early Development in Xenopus laevis

Curtis R Altmann, Esther Bell, Alex Sczyrba, Jason Pun, Stefan Bekiranov, Terry Gaasterland, Ali H Brivanlou

Journal:

Developmental Biology

Year:

2001

Language:

english

File:

PDF, 697 KB

english, 2001

8

COCOA: coordinate covariation analysis of epigenetic heterogeneity

Lawson, John T., Smith, Jason P., Bekiranov, Stefan, Garrett-Bakelman, Francine E., Sheffield, Nathan C.

Journal:

Year:

2020

File:

PDF, 2.26 MB

2020

9

Fluctuations in Electrolytes: The Lebowitz and Other Correlation Lengths

Bekiranov, Stefan, Fisher, Michael E.

Journal:

Physical Review Letters

Year:

1998

Language:

english

File:

PDF, 155 KB

english, 1998

10

Solution behavior of polyethylene oxide in water as a function of temperature and pressure

Bekiranov, Stefan, Bruinsma, Robijn, Pincus, Philip

Journal:

Physical Review E

Year:

1997

Language:

english

File:

PDF, 180 KB

english, 1997

11

NF-κB upregulates glutamine-fructose-6-phosphate transaminase 2 to promote migration in non-small cell lung cancer

Szymura, Szymon J., Zaemes, Jacob P., Allison, David F., Clift, Sheena H., D’Innocenzi, Jaclyn M., Gray, Lisa G., McKenna, Brian D., Morris, Benjamin B., Bekiranov, Stefan, LeGallo, Robin D., Jones, D

Journal:

Cell Communication and Signaling

Year:

2019

Language:

english

File:

PDF, 2.48 MB

english, 2019

12

Systems analysis of barrier molecule and ARNT-related gene expression regulation in melanoma

Leick, Katie M., Obeid, Joseph M., Bekiranov, Stefan, Slingluff, Craig L.

Journal:

Year:

2019

File:

PDF, 3.54 MB

2019

13

Human Adipose-Derived Stromal Cells Accelerate Diabetic Wound Healing: Impact of Cell Formulation and Delivery

Amos, Peter J., Kapur, Sahil K., Stapor, Peter C., Shang, Hulan, Bekiranov, Stefan, Khurgel, Moshe, Rodeheaver, George T., Peirce, Shayn M., Katz, Adam J.

Journal:

Tissue Engineering Part A

Year:

2010

Language:

english

File:

PDF, 38.74 MB

english, 2010

14

Genome-wide predictors of NF-κB recruitment and transcriptional activity

Cieślik, Marcin, Bekiranov, Stefan

Journal:

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

15

Microenvironmental agonists generate de novo phenotypic resistance to combined ibrutinib plus venetoclax in CLL and MCL

Jayappa, Kallesh D., Portell, Craig A., Gordon, Vicki L., Capaldo, Brian J., Bekiranov, Stefan, Axelrod, Mark J., Brett, L. Kyle, Wulfkuhle, Julia D., Gallagher, Rosa I., Petricoin, Emanuel F., Bender

Journal:

Year:

2017

File:

PDF, 2.40 MB

2017

16

Diverging correlation lengths in electrolytes: Exact results at low densities

Bekiranov, Stefan, Fisher, Michael E.

Journal:

Physical Review E

Year:

1999

Language:

english

File:

PDF, 361 KB

english, 1999

17

Implementation of a Hamming distanceâlike genomic quantum classifier using inner products on ibmqx2 and ibmq_16_melbourne

Kathuria, Kunal, Ratan, Aakrosh, McConnell, Michael, Bekiranov, Stefan

Journal:

Quantum Machine Intelligence

Year:

2020

File:

PDF, 2.43 MB

2020

18

Quantification of histone modification ChIP-seq enrichment for data mining and machine learning applications

Stephen A Hoang, Xiaojiang Xu, Stefan Bekiranov

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 790 KB

english, 2011

19

Pausing sites of RNA polymerase II on actively transcribed genes are enriched with DNA double-stranded breaks

Singh, Sandeep, Szlachta, Karol, Manukyan, Arkadi, Raimer, Heather M, Dinda, Manikarna, Bekiranov, Stefan, Wang, Yuh-Hwa

Journal:

Journal of Biological Chemistry

Year:

2020

File:

PDF, 1.64 MB

2020

20

Use of Yeast Chemigenomics and COXEN Informatics in Preclinical Evaluation of Anticancer Agents

Smith, Steven C., Havaleshko, Dmytro M., Moon, Kihyuck, Baras, Alexander S., Lee, Jae, Bekiranov, Stefan, Burke, Daniel J., Theodorescu, Dan

Journal:

Year:

2011

Language:

english

File:

PDF, 2.78 MB

english, 2011

21

10.1038/85922

Gopal, Shuba, Schroeder, Mark, Pieper, Ursula, Sczyrba, Alexander, Aytekin-Kurban, Gulriz, Bekiranov, Stefan, Eduardo Fajardo, J., Eswar, Narayanan, Sanchez, Roberto, Sali, Andrej, Gaasterland, Terry

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 52 KB

english, 2001

22

Combinatorial epigenetic patterns as quantitative predictors of chromatin biology

Cieślik, Marcin, Bekiranov, Stefan

Journal:

Year:

2014

Language:

english

File:

PDF, 959 KB

english, 2014

23

HIV-1 Rev interacts with HERV-K RcREs present in the human genome and promotes export of unspliced HERV-K proviral RNA

Gray, Laurie R., Jackson, Rachel E., Jackson, Patrick E. H., Bekiranov, Stefan, Rekosh, David, Hammarskjöld, Marie-Louise

Journal:

Year:

2019

File:

PDF, 1.89 MB

2019

24

Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs

Simon Cawley, Stefan Bekiranov, Huck H Ng, Philipp Kapranov, Edward A Sekinger, Dione Kampa, Antonio Piccolboni, Victor Sementchenko, Jill Cheng, Alan J Williams, Raymond Wheeler, Brant Wong, Jorg Dre

Journal:

Year:

2004

Language:

english

File:

PDF, 312 KB

english, 2004

25

Human endogenous retrovirus-K mRNA expression and genomic alignment data in hepatoblastoma

Grabski, David F, Ratan, Aakrosh, Gray, Laurie R, Bekiranov, Stefan, Rekosh, David, Hammarskjold, Marie-Louise, Rasmussen, Sara K

Journal:

Year:

2020

File:

PDF, 737 KB

2020

26

Alternative DNA secondary structure formation affects RNA polymerase II promoter-proximal pausing in human

Szlachta, Karol, Thys, Ryan G., Atkin, Naomi D., Pierce, Levi C. T., Bekiranov, Stefan, Wang, Yuh-Hwa

Journal:

Year:

2018

Language:

english

File:

PDF, 3.07 MB

english, 2018

27

Systems analysis of barrier molecule and ARNT-related gene expression regulation in melanoma

Leick, Katie M., Obeid, Joseph M., Bekiranov, Stefan, Slingluff, Craig L.

Journal:

Year:

2019

Language:

english

File:

PDF, 3.54 MB

english, 2019

28

Charge and density fluctuations in electrolytes: The Lebowitz and other correlation lengths

Michael E. Fisher, Stefan Bekiranov

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1999

Language:

english

File:

PDF, 617 KB

english, 1999

29

Microenvironmental agonists generate de novo phenotypic resistance to combined ibrutinib plus venetoclax in CLL and MCL

Jayappa, Kallesh D., Portell, Craig A., Gordon, Vicki L., Capaldo, Brian J., Bekiranov, Stefan, Axelrod, Mark J., Brett, L. Kyle, Wulfkuhle, Julia D., Gallagher, Rosa I., Petricoin, Emanuel F., Bender

Journal:

Year:

2017

Language:

english

File:

PDF, 2.40 MB

english, 2017

30

The Mot1 ATPase and Spt16 Histone Chaperone Co-Regulate Transcription through Preinitiation Complex Assembly and Nucleosome Organization

True, Jason D., Muldoon, Joseph J., Carver, Melissa N., Poorey, Kunal, Shetty, Savera J., Bekiranov, Stefan, Auble, David T.

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 1.72 MB

english, 2016

31

RNA synthesis is associated with multiple TBP-chromatin binding events

Zaidi, Hussain A., Auble, David T., Bekiranov, Stefan

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.74 MB

english, 2017

32

The Snf1 kinase and proteasome-associated Rad23 regulate UV-responsive gene expression

Wade, Staton L, Poorey, Kunal, Bekiranov, Stefan, Auble, David T

Journal:

The EMBO Journal

Year:

2009

Language:

english

File:

PDF, 1.76 MB

english, 2009

33

A Microarray-Based Genetic Screen for Yeast Chronological Aging Factors

Matecic, Mirela, Smith, Daniel L., Pan, Xuewen, Maqani, Nazif, Bekiranov, Stefan, Boeke, Jef D., Smith, Jeffrey S., Kim, Stuart K.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.08 MB

english, 2010

34

Second-generation method for analysis of chromatin binding with formaldehyde–cross-linking kinetics

Zaidi, Hussain, Hoffman, Elizabeth A., Shetty, Savera J., Bekiranov, Stefan, Auble, David T.

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 3.40 MB

english, 2017

35

NF-κB Regulates Mesenchymal Transition for the Induction of Non-Small Cell Lung Cancer Initiating Cells

Kumar, Manish, Allison, David F., Baranova, Natalya N., Wamsley, J. Jacob, Katz, Adam J., Bekiranov, Stefan, Jones, David R., Mayo, Marty W., Chellappan, Srikumar P.

Journal:

Year:

2013

Language:

english

File:

PDF, 940 KB

english, 2013

36

A Machine Learning Model Utilizing a Novel SNP Shows Enhanced Prediction of Coronary Artery Disease Severity

Pattarabanjird, Tanyaporn, Cress, Corban, Nguyen, Anh, Taylor, Angela, Bekiranov, Stefan, McNamara, Coleen

Journal:

Year:

2020

File:

PDF, 2.16 MB

2020

37

The Network Architecture of the Saccharomyces cerevisiae Genome

Hoang, Stephen A., Bekiranov, Stefan, Csermely, Peter

Journal:

Year:

2013

Language:

english

File:

PDF, 2.70 MB

english, 2013

38

Making the most of microarray data

Gaasterland, Terry, Bekiranov, Stefan

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 222 KB

english, 2000

39

Diffusion in Inhomogeneous Media: Theory and Simulations Applied to Whole Cell Photobleach Recovery

Siggia, Eric D., Lippincott-Schwartz, Jennifer, Bekiranov, Stefan

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 412 KB

english, 2000

40

Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression

Xiaojiang Xu, Stephen Hoang, Marty W Mayo, Stefan Bekiranov

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.28 MB

english, 2010

41

Asymmetric primitive-model electrolytes: Debye-Hückel theory, criticality, and energy bounds

Zuckerman, Daniel M., Fisher, Michael E., Bekiranov, Stefan

Journal:

Physical Review E

Year:

2001

Language:

english

File:

PDF, 188 KB

english, 2001

42

Analysis of chromatin binding dynamics using the crosslinking kinetics (CLK) method

Viswanathan, Ramya, Hoffman, Elizabeth A., Shetty, Savera J., Bekiranov, Stefan, Auble, David T.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.04 MB

english, 2014

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